Linux 

Installation 

We introduce how to install optinist. Please follow instructions below.

Note

We have tested OptiNiSt on Ubuntu 20.04/22.04.

1. Make Backend Environment 

Install Tools 

Install gcc, g++

For installing CaImAn, you need to install gcc and g++.

sudo apt install gcc g++

Install Conda Tool 

Install Miniforge

# install (*latest version is fine)
curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh"
bash Miniforge3-$(uname)-$(uname -m).sh

# initial setting (re-login required)
$HOME/miniforge3/bin/conda init
logout

# setting configs
conda config --set channel_priority flexible

Create Conda Environment 

conda create -n optinist python=3.9
conda activate optinist

Install Library 

pip install optinist

Set Saving Directory 

Optinist default saving directory is /tmp/studio. If you reboot your PC, this repository content is deleted. And setting the saving directory in environment path.

export OPTINIST_DIR="your_saving_dir"

2. Run Backend 

run_optinist

run_optinist log is as below:

$ run_optinist
INFO:     Will watch for changes in these directories: ['/home/oist/optinist']
INFO:     Uvicorn running on http://0.0.0.0:8000 (Press CTRL+C to quit)
INFO:     Started reloader process [xxxx] using statreload
INFO:     Started server process [xxxx]
INFO:     Waiting for application startup.
INFO:     Application startup complete.

Launch browser, and go to http://localhost:8000

Done!